Detailed information of SNP:
|
SNP ID:
sf1128285838(Gbrowse)
Chromosome: chr11 Position: 28285838 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.50% | 33.50% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 496 | 35.28% | 64.72% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 334 | 48.50% | 51.50% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128285838 | A->T | INTERGENIC | None |