Detailed information of SNP:
|
SNP ID:
sf1128290575(Gbrowse)
Chromosome: chr11 Position: 28290575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 93.61% | 6.39% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 478 | 84.31% | 15.69% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 328 | 82.93% | 17.07% |
| Tropical Japonica | 87 | 90.80% | 9.20% |
| Japonica Intermediate | 63 | 82.54% | 17.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128290575 | G->A | LOC_Os11g47780(LOC_Os11g47780.1) | Non-Synonymous SNP |