Detailed information of SNP:
|
SNP ID:
sf1128293155(Gbrowse)
Chromosome: chr11 Position: 28293155 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.02% | 28.98% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 496 | 38.31% | 61.69% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 49.25% | 50.75% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128293155 | C->T | INTERGENIC | None |