Detailed information of SNP:
|
SNP ID:
sf1128294403(Gbrowse)
Chromosome: chr11 Position: 28294403 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.70% | 25.30% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 46.48% | 53.52% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128294403 | C->T | INTERGENIC | None |