Detailed information of SNP:
|
SNP ID:
sf1128294660(Gbrowse)
Chromosome: chr11 Position: 28294660 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 75.04% | 24.96% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 496 | 49.80% | 50.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128294660 | A->G | INTERGENIC | None |