Detailed information of SNP:
|
SNP ID:
sf1128294761(Gbrowse)
Chromosome: chr11 Position: 28294761 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.04% | 24.96% |
| All Indica | 798 | 90.73% | 9.27% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128294761 | C->T | INTERGENIC | None |