Detailed information of SNP:
|
SNP ID:
sf1128304624(Gbrowse)
Chromosome: chr11 Position: 28304624 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.24% | 7.76% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128304624 | C->T | LOC_Os11g47809(LOC_Os11g47809.1) | Synonymous |