Detailed information of SNP:
|
SNP ID:
sf1128308135(Gbrowse)
Chromosome: chr11 Position: 28308135 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 798 | 50.50% | 49.50% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 45.99% | 54.01% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128308135 | C->T | INTERGENIC | None |