Detailed information of SNP:
|
SNP ID:
sf1128319259(Gbrowse)
Chromosome: chr11 Position: 28319259 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.68% | 26.32% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 34.61% | 65.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 47.16% | 52.84% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128319259 | C->A | LOC_Os11g47820(LOC_Os11g47820.1) | Synonymous |
| sf1128319259 | C->A | LOC_Os11g47820(LOC_Os11g47820.2) | Synonymous |