Detailed information of SNP:
|
SNP ID:
sf1128323365(Gbrowse)
Chromosome: chr11 Position: 28323365 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 74.70% | 25.30% |
| All Indica | 795 | 96.86% | 3.14% |
| All Japonica | 495 | 36.77% | 63.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 333 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128323365 | G->A | LOC_Os11g47830(LOC_Os11g47830.1) | INTRON |