Detailed information of SNP:
|
SNP ID:
sf1128330002(Gbrowse)
Chromosome: chr11 Position: 28330002 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 82.52% | 17.48% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128330002 | A->G | INTERGENIC | None |