Detailed information of SNP:
|
SNP ID:
sf1128335324(Gbrowse)
Chromosome: chr11 Position: 28335324 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 51.01% | 48.99% |
| All Indica | 717 | 20.08% | 79.92% |
| All Japonica | 494 | 93.52% | 6.48% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 328 | 18.90% | 81.10% |
| Indica II | 201 | 17.41% | 82.59% |
| Indica Intermediate | 188 | 25.00% | 75.00% |
| Temperate Japonica | 334 | 91.32% | 8.68% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128335324 | T->C | INTERGENIC | None |