Detailed information of SNP:
|
SNP ID:
sf1128336160(Gbrowse)
Chromosome: chr11 Position: 28336160 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 94.71% | 5.29% |
| All Indica | 749 | 90.65% | 9.35% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 362 | 94.20% | 5.80% |
| Indica II | 189 | 86.77% | 13.23% |
| Indica Intermediate | 198 | 87.88% | 12.12% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128336160 | A->G | INTERGENIC | None |