Detailed information of SNP:
|
SNP ID:
sf1128340614(Gbrowse)
Chromosome: chr11 Position: 28340614 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.61% | 44.39% |
| All Indica | 799 | 86.61% | 13.39% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128340614 | G->A | INTERGENIC | None |