Detailed information of SNP:
|
SNP ID:
sf1128340678(Gbrowse)
Chromosome: chr11 Position: 28340678 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.84% | 32.16% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 496 | 25.60% | 74.40% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 27.84% | 72.16% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128340678 | C->T | INTERGENIC | None |