Detailed information of SNP:
|
SNP ID:
sf1128342330(Gbrowse)
Chromosome: chr11 Position: 28342330 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.03% | 43.97% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128342330 | G->A | INTERGENIC | None |