Detailed information of SNP:
|
SNP ID:
sf1128373109(Gbrowse)
Chromosome: chr11 Position: 28373109 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 70.05% | 29.95% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 25.75% | 74.25% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 27.46% | 72.54% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128373109 | G->A | LOC_Os11g47910(LOC_Os11g47910.1) | Non-Synonymous SNP |