Detailed information of SNP:
|
SNP ID:
sf1128391087(Gbrowse)
Chromosome: chr11 Position: 28391087 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.99% | 35.01% |
| All Indica | 797 | 92.85% | 7.15% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 23.35% | 76.65% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128391087 | T->C | LOC_Os11g47940(LOC_Os11g47940.1) | INTRON |