Detailed information of SNP:
|
SNP ID:
sf1128393817(Gbrowse)
Chromosome: chr11 Position: 28393817 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 56.91% | 43.09% |
| All Indica | 796 | 72.11% | 27.89% |
| All Japonica | 467 | 28.91% | 71.09% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 209 | 63.64% | 36.36% |
| Temperate Japonica | 331 | 25.98% | 74.02% |
| Tropical Japonica | 73 | 47.95% | 52.05% |
| Japonica Intermediate | 63 | 22.22% | 77.78% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128393817 | A->G | LOC_Os11g47940(LOC_Os11g47940.1) | Non-Synonymous SNP |