Detailed information of SNP:
|
SNP ID:
sf1128414582(Gbrowse)
Chromosome: chr11 Position: 28414582 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 56.33% | 43.67% |
| All Indica | 793 | 88.27% | 11.73% |
| All Japonica | 491 | 4.48% | 95.52% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 329 | 6.08% | 93.92% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128414582 | T->C | INTERGENIC | None |