Detailed information of SNP:
|
SNP ID:
sf1128421565(Gbrowse)
Chromosome: chr11 Position: 28421565 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.85% | 49.15% |
| All Indica | 798 | 17.04% | 82.96% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 8.80% | 91.20% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128421565 | G->A | INTERGENIC | None |