Detailed information of SNP:
|
SNP ID:
sf1128464247(Gbrowse)
Chromosome: chr11 Position: 28464247 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 61.83% | 38.17% |
| All Indica | 795 | 86.67% | 13.33% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128464247 | C->G | LOC_Os11g48080(LOC_Os11g48080.1) | UTR_5_PRIME |