Detailed information of SNP:
|
SNP ID:
sf1128483288(Gbrowse)
Chromosome: chr11 Position: 28483288 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 98.72% | 1.28% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 482 | 96.68% | 3.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 97.54% | 2.46% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128483288 | G->A | LOC_Os11g48100(LOC_Os11g48100.1) | Synonymous |