Detailed information of SNP:
|
SNP ID:
sf1128492562(Gbrowse)
Chromosome: chr11 Position: 28492562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 81.32% | 18.68% |
| All Indica | 793 | 85.25% | 14.75% |
| All Japonica | 497 | 86.52% | 13.48% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128492562 | C->T | INTERGENIC | None |