Detailed information of SNP:
|
SNP ID:
sf1128493060(Gbrowse)
Chromosome: chr11 Position: 28493060 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 82.49% | 17.51% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128493060 | C->T | INTERGENIC | None |