Detailed information of SNP:
|
SNP ID:
sf1128497008(Gbrowse)
Chromosome: chr11 Position: 28497008 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.45% | 6.55% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128497008 | C->T | INTERGENIC | None |