Detailed information of SNP:
|
SNP ID:
sf1128497993(Gbrowse)
Chromosome: chr11 Position: 28497993 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 56.52% | 43.48% |
| All Indica | 769 | 48.24% | 51.76% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 363 | 47.38% | 52.62% |
| Indica II | 208 | 54.81% | 45.19% |
| Indica Intermediate | 198 | 42.93% | 57.07% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128497993 | G->C | INTERGENIC | None |