Detailed information of SNP:
|
SNP ID:
sf1200002632(Gbrowse)
Chromosome: chr12 Position: 2632 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 94.38% | 5.62% |
| All Indica | 782 | 94.63% | 5.37% |
| All Japonica | 483 | 92.75% | 7.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 198 | 82.32% | 17.68% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 327 | 98.47% | 1.53% |
| Tropical Japonica | 88 | 67.05% | 32.95% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200002632 | C->T | LOC_Os12g01010(LOC_Os12g01010.1) | INTRON |