Detailed information of SNP:
|
SNP ID:
sf1200050954(Gbrowse)
Chromosome: chr12 Position: 50954 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 95.88% | 4.12% |
| All Indica | 766 | 92.56% | 7.44% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 93.33% | 6.67% |
| Indica II | 199 | 88.94% | 11.06% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200050954 | G->A | INTERGENIC | None |