Detailed information of SNP:
|
SNP ID:
sf1200139958(Gbrowse)
Chromosome: chr12 Position: 139958 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 92.90% | 7.10% |
| All Indica | 796 | 91.58% | 8.42% |
| All Japonica | 461 | 95.23% | 4.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 87.67% | 12.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 307 | 97.72% | 2.28% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 62 | 87.10% | 12.90% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200139958 | C->T | LOC_Os12g01240(LOC_Os12g01240.1) | Synonymous |