Detailed information of SNP:
|
SNP ID:
sf1200148931(Gbrowse)
Chromosome: chr12 Position: 148931 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.83% | 11.17% |
| All Indica | 795 | 84.15% | 15.85% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 73.19% | 26.81% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200148931 | G->A | LOC_Os12g01250(LOC_Os12g01250.1) | INTRON |