Detailed information of SNP:
|
SNP ID:
sf1200179389(Gbrowse)
Chromosome: chr12 Position: 179389 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 51.72% | 48.28% |
| All Indica | 775 | 18.19% | 81.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 358 | 22.63% | 77.37% |
| Indica II | 209 | 12.92% | 87.08% |
| Indica Intermediate | 208 | 15.87% | 84.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200179389 | A->C | LOC_Os12g01320(LOC_Os12g01320.1) | Non-Synonymous SNP |