Detailed information of SNP:
|
SNP ID:
sf1200179642(Gbrowse)
Chromosome: chr12 Position: 179642 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 66.44% | 33.56% |
| All Indica | 693 | 40.40% | 59.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 326 | 40.80% | 59.20% |
| Indica II | 184 | 39.67% | 60.33% |
| Indica Intermediate | 183 | 40.44% | 59.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200179642 | C->A | LOC_Os12g01320(LOC_Os12g01320.1) | Synonymous |