Detailed information of SNP:
|
SNP ID:
sf1200179797(Gbrowse)
Chromosome: chr12 Position: 179797 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 52.14% | 47.86% |
| All Indica | 785 | 19.49% | 80.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 368 | 24.46% | 75.54% |
| Indica II | 209 | 13.88% | 86.12% |
| Indica Intermediate | 208 | 16.35% | 83.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200179797 | T->C | LOC_Os12g01320(LOC_Os12g01320.1) | Non-Synonymous SNP |