Detailed information of SNP:
|
SNP ID:
sf1200180061(Gbrowse)
Chromosome: chr12 Position: 180061 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 53.25% | 46.75% |
| All Indica | 782 | 21.36% | 78.64% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 366 | 25.68% | 74.32% |
| Indica II | 210 | 16.19% | 83.81% |
| Indica Intermediate | 206 | 18.93% | 81.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200180061 | C->A | LOC_Os12g01320(LOC_Os12g01320.1) | INTRON |