Detailed information of SNP:
|
SNP ID:
sf1200180597(Gbrowse)
Chromosome: chr12 Position: 180597 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 97.93% | 2.07% |
| All Indica | 782 | 96.42% | 3.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200180597 | G->T | LOC_Os12g01320(LOC_Os12g01320.1) | INTRON |