Detailed information of SNP:
|
SNP ID:
sf1200181957(Gbrowse)
Chromosome: chr12 Position: 181957 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 97.57% | 2.43% |
| All Indica | 790 | 99.87% | 0.13% |
| All Japonica | 451 | 93.13% | 6.87% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 89.84% | 10.16% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200181957 | A->T | LOC_Os12g01320(LOC_Os12g01320.1) | Non-Synonymous SNP |