Detailed information of SNP:
|
SNP ID:
sf1200181975(Gbrowse)
Chromosome: chr12 Position: 181975 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 63.16% | 36.84% |
| All Indica | 747 | 36.55% | 63.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 347 | 38.33% | 61.67% |
| Indica II | 205 | 34.63% | 65.37% |
| Indica Intermediate | 195 | 35.38% | 64.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200181975 | T->C | LOC_Os12g01320(LOC_Os12g01320.1) | Synonymous |