Detailed information of SNP:
|
SNP ID:
sf1200181981(Gbrowse)
Chromosome: chr12 Position: 181981 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 60.49% | 39.51% |
| All Indica | 763 | 32.24% | 67.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 357 | 34.17% | 65.83% |
| Indica II | 206 | 30.10% | 69.90% |
| Indica Intermediate | 200 | 31.00% | 69.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200181981 | G->A | LOC_Os12g01320(LOC_Os12g01320.1) | Synonymous |