Detailed information of SNP:
SNP ID:
sf1200182647(Gbrowse)
Chromosome: chr12 Position: 182647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1396 | 56.23% | 43.77% |
All Indica | 776 | 25.90% | 74.10% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 67.16% | 32.84% |
Indica I | 362 | 28.45% | 71.55% |
Indica II | 208 | 24.52% | 75.48% |
Indica Intermediate | 206 | 22.82% | 77.18% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1200182647 | C->T | LOC_Os12g01320(LOC_Os12g01320.1) | Synonymous |