Detailed information of SNP:
|
SNP ID:
sf1200184437(Gbrowse)
Chromosome: chr12 Position: 184437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 64.69% | 35.31% |
| All Indica | 746 | 39.14% | 60.86% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 351 | 35.61% | 64.39% |
| Indica II | 203 | 39.90% | 60.10% |
| Indica Intermediate | 192 | 44.79% | 55.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200184437 | G->A | LOC_Os12g01320(LOC_Os12g01320.1) | Non-Synonymous SNP |