Detailed information of SNP:
|
SNP ID:
sf1200187394(Gbrowse)
Chromosome: chr12 Position: 187394 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 54.01% | 45.99% |
| All Indica | 779 | 23.88% | 76.12% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 369 | 27.64% | 72.36% |
| Indica II | 206 | 19.90% | 80.10% |
| Indica Intermediate | 204 | 21.08% | 78.92% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200187394 | C->T | LOC_Os12g01330(LOC_Os12g01330.1) | Synonymous |