Detailed information of SNP:
|
SNP ID:
sf1200188034(Gbrowse)
Chromosome: chr12 Position: 188034 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 51.81% | 48.19% |
| All Indica | 786 | 21.25% | 78.75% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 371 | 23.99% | 76.01% |
| Indica II | 208 | 18.27% | 81.73% |
| Indica Intermediate | 207 | 19.32% | 80.68% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200188034 | T->A | LOC_Os12g01330(LOC_Os12g01330.1) | Non-Synonymous SNP |