Detailed information of SNP:
|
SNP ID:
sf1200188916(Gbrowse)
Chromosome: chr12 Position: 188916 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 81.86% | 18.14% |
| All Indica | 786 | 68.32% | 31.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 78.28% | 21.72% |
| Indica II | 209 | 54.55% | 45.45% |
| Indica Intermediate | 204 | 64.22% | 35.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200188916 | A->C | INTERGENIC | None |