Detailed information of SNP:
|
SNP ID:
sf1200190651(Gbrowse)
Chromosome: chr12 Position: 190651 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 83.96% | 16.04% |
| All Indica | 790 | 76.71% | 23.29% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 369 | 66.67% | 33.33% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200190651 | T->G | LOC_Os12g01340(LOC_Os12g01340.1) | Synonymous |