Detailed information of SNP:
|
SNP ID:
sf1200199887(Gbrowse)
Chromosome: chr12 Position: 199887 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 76.80% | 23.20% |
| All Indica | 785 | 64.20% | 35.80% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 370 | 54.05% | 45.95% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 206 | 57.77% | 42.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200199887 | A->G | INTERGENIC | None |