Detailed information of SNP:
|
SNP ID:
sf1200245210(Gbrowse)
Chromosome: chr12 Position: 245210 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 88.37% | 11.63% |
| All Indica | 793 | 97.23% | 2.77% |
| All Japonica | 496 | 72.98% | 27.02% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 334 | 67.37% | 32.63% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200245210 | G->A | LOC_Os12g01380(LOC_Os12g01380.1) | INTRON |