Detailed information of SNP:
|
SNP ID:
sf1200248590(Gbrowse)
Chromosome: chr12 Position: 248590 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200248590 | C->T | INTERGENIC | None |