Detailed information of SNP:
|
SNP ID:
sf1200291611(Gbrowse)
Chromosome: chr12 Position: 291611 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 80.16% | 19.84% |
| All Indica | 776 | 64.82% | 35.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 49.30% | 50.70% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 204 | 69.12% | 30.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200291611 | T->A | INTERGENIC | None |