Detailed information of SNP:
|
SNP ID:
sf1200311356(Gbrowse)
Chromosome: chr12 Position: 311356 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 62.64% | 37.36% |
| All Indica | 678 | 33.04% | 66.96% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 61 | 78.69% | 21.31% |
| Indica I | 311 | 34.41% | 65.59% |
| Indica II | 180 | 31.11% | 68.89% |
| Indica Intermediate | 187 | 32.62% | 67.38% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200311356 | A->T | INTERGENIC | None |